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Course C3: Advanced Algorithms in Computational Biology (3 credit units)

 

 

Semester: 05-06 Spring, TIGP-BP

Place: Institute of Information Science, Academia Sinica, New Building, Rm. 107

Time:  Friday Afternoon,  2:00-5:00 AM

Topic:

 

Week

Date

Topics

Lecturers

Slides

Online

1

2005/02/25

Machine learning: introduction and prototype learning (k-means, fuzzy C-means, EM etc)

Fu Chang

         

          

2

2005/03/01 (Tue.)

Machine learning foundations: the probabilistic framework

Chun-Nan Hsu                 

3

2005/03/02 (Wed.)

Probabilistic modeling, inference and learning Chun-Nan Hsu               

4

2005/03/18

Machine learning algorithms (I): genetic algorithm and simulated annealing

Ying-Ping Chen

                     

5

2005/03/25 Machine learning algorithms (II): neural networks Tyng-Luh Liu      

no recording

    allowed      

6

2005/04/01

Machine learning algorithms (III): support vector machines

Chi-Jen Lin      

pdf cant be

recorded   

7

2005/04/08 Machine learning algorithms (IV): hidden Markov model Hsin-Min Wang                      

8

2005/04/15 2005/04/22

Midterm Exam      

9

2005/04/29 Machine Learning (VIII): maximum entropy, conditional random field Fu Chang                      

10

2005/05/06

Sequence Analysis Algorithms (I): multiple sequence alignment

Kun-Mao Chao          no recording

  allowed 

11

2005/05/13 Protein Structure Prediction Ting-Yi Sung                     

12

2005/05/20 Motif finding Yuh-Jyh Hu            

13

2005/05/27

Phylogenetic Trees Construction

Chun-Chieh Shih

             

14

2005/06/03 Natural language processing Lee-Feng Chien                   

15

2005/06/10 Natural language processing Shih-Hung Wu                       

16

2005/06/17 Final Exam