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Advanced Algorithms in Computational Biology (C3)

 

Semester: Spring 2008, TIGP-BP
Place
: Institute of Information Science, Academia Sinica, New Building, Rm. 107
Time: Friday Afternoons,  2:00-5:00 PM

References:

1. Pattern Classification (Duda, Harg, and Stork, 2001)  

2. An Introduction to Support Vector Machines and Other Kernel-based Learning Methods (Cristianini

    and Shawe-Taylor, 2000)    

3. First Course in Database Systems (3rd Edition, Ullman and Widom, 2007)

 

 

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2008/02/22

Database: SQL, Relational DB Theory, Normalization

Kuo-Yu Huang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif 

N/A

hw
(Mar21)
 

2

2008/02/29

Database: Indexing Structures and Data Mining Algorithms

Kuo-Yu Huang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

N/A

  hw
(Mar21)

3

2008/03/07

 

Learning to Classify Data

 

Yuh-Jye Lee

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

   N/A

 

4

2008/03/14

Learning by Optimization

Han-Shen Huang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

   N/A

 

5

2008/03/21

Prototype Learning

Fu Chang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

 

6

2008/03/28

Large Margin and Support Vector Machines

Fu Chang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

 

7

2008/04/01

(Tue.)2-5pm

Lab (to be re-scheduled due to national holiday)

JenCheng Chen

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

N/A

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gifhttp://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif
hw
(Apr20)
 

8

2008/04/11

Review week

 

 

 

 

9

2008/04/18

Midterm Exam

 

 

 

 

10

2008/04/25

Bias, Variance and Boosting

Chun-Nan Hsu

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

N/A

 

11

2008/05/02

EM and Bayesian Nets

Han-Shen Huang

 

N/A

 

12

2008/05/09

Hidden Markov Models

Hsin-Min Wang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

 

13

2008/05/16

 

Hidden Markov Models

 

Hsin-Min Wang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif 

 

 

14

2008/05/19

(Mon.)2-5pm

Conditional Random Fields

Chun-Nan Hsu

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

 

15

2008/05/30

Phylogenetics Trees and Molecular Evolution Theory

 

Dar-Yi Wang

 

N/A

N/A

none.

16

2008/06/06

Biological Networks and Systems Biology

Hsuan-Cheng Huang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

N/A

 

17

2008/06/13

Review week

 

 

 

 

18

2008/06/20

Final Exam

 

 

 

 

 

 

Bioinformatics Program, TIGP , Academia Sinica , Taiwan c 2004 - 2005