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Biological Computing II (C2)

 

Semester: 2012 Spring, TIGP-BP

This course covers the fundamentals of statistics and basic tools for bioinformatics analysis.  In the first part students will learn basic statistical concepts and methods, including probability, common distributions, hypothesis testing, regression analysis, and analysis of categorical data.  In the second part several commonly used methods in bioinformatics will be introduced, including probabilistic graphical models, clustering, classification, and survival analysis.
 

Place: Institute of Information Science, Academia Sinica, New Building, Rm. 107
Time: Thursday Mornings , 9:00- 12:00 AM

Lecturers:

Dr. Yeang, Chen-Hsiang (楊振翔) chyeang@stat.sinica.edu.tw

Dr. Yang, Hsin-Chou (楊欣洲) hsinchou@stat.sinica.edu.tw

Dr. Shieh, Grace (謝叔蓉) gshieh@stat.sinica.edu.tw

Dr. Yuan, Shinsheng (袁新盛) syuan@stat.sinica.edu.tw

Dr. Chen, Hsuan-Yu (陳璿宇) hychen@stat.sinica.edu.tw

Dr. Phoa, Frederick (潘建興) fredphoa@stat.sinica.edu.tw

Dr. Liu, Wei-Chung (劉維中) wliu1975@stat.sinica.edu.tw

                   

Teaching assistants: Mr. Wan-Schwin Cheng (鎮萬勛) msa955126@gmail.com

Office hours: By appointment

Grades:  Midterm exam 50%.  Final exam 50%

Readings: (1) Course slides.  (2) Reading materials mentioned in each lecture.

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2012/02/23

Descriptive statistics, Genomic Data Analysis @Rm.101

Chen-Hsiang Yeang

2

2012/03/01

Probability

Hsin-Chou Yang

3

2012/03/08

Discrete Distributions and Contingency Tables

Hsin-Chou Yang

4

2012/03/15

Continuous Distributions, Expectations and Basic Statistics

Hsin-Chou Yang


 

5

2012/03/22

Parameter Estimation and Confidence Interval

Shin-Sheng Yuan

 


 

6

2012/03/29

Hypothesis Testing, P-value, False Discovery Rate

Grace Shieh

 


 

7

2012/04/05

Comparative Study, Two Sample Test

Shin-Sheng Yuan


 

8

2012/04/12

WReview week

 

9

2012/04/19

Midterm Exam

 

10

2012/04/26

Analysis of Categorical Data, Chisq and Multinomial

Hsuan-Yu Chen

 

11

2012/05/03

Correlation, Regression Analysis and ANOVA

Phoa, Frederick

 

 

12

2012/05/10

Clustering

Chen-Hsiang Yeang

 

13

2012/05/17

Classification

Chen-Hsiang Yeang

14

2012/05/24

Survival Data Analysis

Hsuan-Yu Chen

 

 

15

2012/05/31

Graphic Model I

Liu, Wei-Chung

 

 

16

2012/06/09

Graphic Model II

Liu, Wei-Chung

 

 

17

2012/06/16

Review week

 

18

2012/06/23

Final Exam

 

 

 

Bioinformatics Program, TIGP, Academia Sinica, Taiwan © 2004-2011