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Biological Computing II (C2)

 

Semester: 2013 Spring, TIGP-BP

This course covers the fundamentals of statistics and basic tools for bioinformatics analysis. In the first part students will learn basic statistical concepts and methods, including probability, common distributions, parameter estimation, hypothesis testing, regression analysis, and categorical data analysis. In the second part several commonly used methods in bioinformatics will be introduced, including clustering, classification, survival analysis, and probabilistic graphical models.
 

Place: Institute of Information Science, Academia Sinica, Old Building, Rm. 108
Time: Thursday Mornings , 9:00- 12:00 AM

Lecturers:

Dr. Yang, Hsin-Chou (楊欣洲) hsinchou@stat.sinica.edu.tw

Dr. Yeang, Chen-Hsiang (楊振翔) chyeang@stat.sinica.edu.tw

Dr. Shieh, Grace (謝叔蓉) gshieh@stat.sinica.edu.tw

Dr. Yuan, Shinsheng (袁新盛) syuan@stat.sinica.edu.tw

Dr. Chen, Hsuan-Yu (陳璿宇) hychen@stat.sinica.edu.tw

Dr. Phoa, Frederick (潘建興) fredphoa@stat.sinica.edu.tw

Dr. Liu, Wei-Chung (劉維中) wliu1975@stat.sinica.edu.tw

                   

Teaching assistants: Shih-Kai Chu (朱是鍇) uhcnivag@stat.sinica.edu.tw

Office hours: By appointment

Grades:  Midterm exam 50%.  Final exam 50%

Readings: (1) Course slides.  (2) Reading materials mentioned in each lecture.

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2013/02/21

Probability

Hsin-Chou Yang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

2

2013/02/28

Discrete Distributions and Contingency Tables

Hsin-Chou Yang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

3

2013/03/07

Descriptive Statistics, Genomic Data Analysis

Chen-Hsiang Yeang

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif

4

2013/03/14

Continuous Distributions, Expectations and Basic Statistics

Grace Shieh

http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif 

 


 

5

2013/03/21

none

none

 


 

6

2012/03/28

Parameter Estimation and Confidence Interval

Shin-Sheng Yuan

 


 

7

2013/04/04(TBA)

Hypothesis Testing, P-value, False Discovery Rate

Grace Shieh

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http://tigpbp.iis.sinica.edu.tw/pic/icon_download.gif


 

8

2013/05/28 14:00-17:00

Comparative Study, Two Sample Test

@IIS724

 Shin-Sheng Yuan

   

9

2012/04/18

Midterm Exam

 

10

2013/04/25

Analysis of Categorical Data, Chisq and Multinomial

Hsuan-Yu Chen

 

 

11

2013/05/02

Correlation, Regression Analysis and ANOVA

Phoa, Frederick

 

 

12

2013/05/09

Clustering

Chen-Hsiang Yeang

 

 

13

2013/05/16

Classification

@IIS722

Chen-Hsiang Yeang

14

2013/05/23

Survival Data Analysis

@IIS722

Hsuan-Yu Chen

 

 

15

2013/05/30

Graphic Model I

@IIS722

Liu, Wei-Chung

 

 

16

2013/06/06

Graphic Model II

@IIS722

Liu, Wei-Chung

 

 

17

2013/06/13

Review week

 

18

2013/06/20

Final Exam @IIS722

 

 

 

Bioinformatics Program, TIGP, Academia Sinica, Taiwan © 2004-2011