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Biological Computing II (C2)

 

Semester: 2009 Spring, TIGP-BP

This course covers the fundamentals of statistics and basic tools for bioinformatics analysis.  In the first part students will learn basic statistical concepts and methods, including probability, common distributions, hypothesis testing, regression analysis, and analysis of categorical data.  In the second part several commonly used methods in bioinformatics will be introduced, including clustering, classification, survival analysis, and probabilistic graphical models.
 

Place: Institute of Information Science, Academia Sinica, New Building, Rm. 107
Time: Thursday Mornings , 9:00- 12:00 AM

Lecturers: Dr. Yeang, Chen-Hsiang (楊振翔) chyeang@stat.sinica.edu.tw

             Dr. Yang, Hsin-Chou (楊欣) hsinchou@stat.sinica.edu.tw

             Dr. Yuan, Shinsheng (袁新盛) syuan@stat.sinica.edu.tw

             Dr. Liu, Wei-Chung (劉維中) Wliu1975@stat.sinica.edu.tw

             Dr. Chen, Hsuan-Yu (陳璿宇) hychen@stat.sinica..edu.tw

                   

Teaching assistants : Tseng, Yuying (曾毓英) yuying@stat.sinica.edu.tw

                                  Chiang, Tse-Ching (江姿青) tcchiang@stat.sinica.edu.tw

Office hours: By appointment.

Grades:  Midterm exam 50%.  Final exam 50%

Readings: Course slides.  Reading materials mentioned in each lecture.

 

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2009/02/26

Descriptive statistics, Genomic Data Analysis

Chen-Hsiang Yeang

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

2

2009/03/05

Basic Probability

Hsin-Chou Yang

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

3

2009/03/12

Discrete Distributions and Contingency Tables

Hsin-Chou Yang

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

4

2009/03/19

Continuous Distributions and Basic Statistics

Hsin-Chou Yang

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif
(R)

5

2009/03/25
(Wed.)1-4pm

Parameter Estimation and Confidence Interval @R308, Stat.

Hsin-Sheng Yuan

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif
(HW)

6

2009/04/01
(Wed.)1-4pm  

Hypothesis Testing, p-value, False Discovery Rate @R308, Stat.

Hsin-Sheng Yuan

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif
(HW)

7

2009/04/08
(Wed.)2-5pm

Comparative Study, Two sample t-test @R308, Stat.

Hsin-Sheng Yuan

http://tigpbp.iis.sinica.edu.tw/icon_download.gif
(HW)

8

2009/04/16

Review week

 

9

2009/04/23

Midterm Exam

 

10

2009/04/30

Correlation

Wei-Chung Liu

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif

11

2009/05/12
(Tue.)2-5pm

Regression Analysis and ANOVA @109, Stat.

Hsuan-Yu Chen

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif

12

2009/05/26
(Tue.)2-5pm

Analysis of Categorical Data, Chisq and Multinomial @109, Stat.

Hsuan-Yu Chen

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

http://tigpbp.iis.sinica.edu.tw/icon_download.gif

13

2009/05/21

Clustering

Chen-Hsiang Yeang

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif

14

2009/05/27
(Wed.)2-5pm

Classification @R208, Stat.

Chen-Hsiang Yeang

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15

2009/06/29
(Mon.)1-4pm

Survival Data Analysis @R109, Stat.

Hsuan-Yu Chen

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif

16

Part1:
2009/06/12
(Fri.)9-12am

Part2:
2009/07/01
(Wed.)2-5pm

Graphic Model @R106, IIS

Wei-Chung Liu

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Part1
http://tigpbp.iis.sinica.edu.tw/icon_download.gif

Part2
http://tigpbp.iis.sinica.edu.tw/icon_download.gif
 

17

2009/06/18

Review week

 

18

2009/06/25

Final Exam

 

 

 

Bioinformatics Program, TIGP, Academia Sinica, Taiwan © 2004-2005