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Biological Computing II (C2)

 

Semester: 2010 Spring, TIGP-BP

This course covers the fundamentals of statistics and basic tools for bioinformatics analysis.  In the first part students will learn basic statistical concepts and methods, including probability, common distributions, hypothesis testing, regression analysis, and analysis of categorical data.  In the second part several commonly used methods in bioinformatics will be introduced, including clustering, classification, survival analysis, and probabilistic graphical models.
 

Place: Institute of Information Science, Academia Sinica, New Building, Rm. 107
Time: Thursday Mornings , 9:00- 12:00 AM

Lecturers: Dr. Yeang, Chen-Hsiang (楊振翔) chyeang@stat.sinica.edu.tw

             Dr. Yang, Hsin-Chou (楊欣) hsinchou@stat.sinica.edu.tw

             Dr. Yuan, Shinsheng (袁新盛) syuan@stat.sinica.edu.tw

             Dr. Liu, Wei-Chung (劉維中) Wliu1975@stat.sinica.edu.tw

             Dr. Chen, Hsuan-Yu (陳璿宇) hychen@stat.sinica..edu.tw

                   

Teaching assistants: Mei-Chu Huang (黃美菊) smallmei@stat.sinica.edu.tw

Office hours: By appointment.

Grades:  Midterm exam 50%.  Final exam 50%

Readings: Course slides.  Reading materials mentioned in each lecture.

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2010/02/25

Descriptive statistics, Genomic Data Analysis

Chen-Hsiang Yeang

2

2010/03/04

Probability

Hsin-Chou Yang

3

2010/03/11

Discrete Distributions and Contingency Tables

Hsin-Chou Yang

4

2010/03/18

Continuous Distributions, expectatoins and Basic Statistics

Hsin-Chou Yang


 

5

2010/03/25

Parameter Estimation and Confidence Interval

Hsin-Sheng Yuan

 


 

6

2010/04/01

Hypothesis Testing, p-value, False Discovery Rate

Hsin-Sheng Yuan

 


 

7

2010/04/08

Comparative Study, Two sample test

Hsin-Sheng Yuan


 

8

2010/04/15

Review week

 

9

2010/04/22

Midterm Exam

 

10

2010/04/29

Correlation

Wei-Chung Liu

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11

2010/05/25(Tue.)2-5pm

Regression Analysis and ANOVA @ISS Rm.308

Hsuan-Yu Chen

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12

2010/06/01(Tue.)2-5pm

Analysis of Categorical Data, Chisq and Multinomial @ISS Rm.308

Hsuan-Yu Chen

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http://tigpbp.iis.sinica.edu.tw/icon_download.gif

13

2010/05/20

Clustering @Rm.406

Chen-Hsiang Yeang

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14

2010/05/27

Classification @Rm.101

Chen-Hsiang Yeang

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15

2010/06/15(Tue.)2-5pm

Survival Data Analysis @ISS Rm.308

Hsuan-Yu Chen

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16

2010/06/10

Graphic Model

Wei-Chung Liu

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17

2010/06/18

Review week

 

18

2010/06/24

Final Exam

 

 

 

Bioinformatics Program, TIGP, Academia Sinica, Taiwan © 2004-2005