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Biological Computing II (C2)

 

Semester: 2011 Spring, TIGP-BP

This course covers the fundamentals of statistics and basic tools for bioinformatics analysis.  In the first part students will learn basic statistical concepts and methods, including probability, common distributions, hypothesis testing, regression analysis, and analysis of categorical data.  In the second part several commonly used methods in bioinformatics will be introduced, including probabilistic graphical models, clustering, classification, and survival analysis.
 

Place: Institute of Information Science, Academia Sinica, New Building, Rm. 107
Time: Thursday Mornings , 9:00- 12:00 AM

Lecturers: Dr. Yeang, Chen-Hsiang (楊振翔) chyeang@stat.sinica.edu.tw

             Dr. Yang, Hsin-Chou (楊欣) hsinchou@stat.sinica.edu.tw

Dr. Shieh, Shwu-Rong (謝叔蓉) gshieh@stat.sinica.edu.tw

             Dr. Yuan, Shinsheng (袁新盛) syuan@stat.sinica.edu.tw

             Dr. Liu, Wei-Chung (劉維中) Wliu1975@stat.sinica.edu.tw

             Dr. Chen, Hsuan-Yu (陳璿宇) hychen@stat.sinica..edu.tw

                   

Teaching assistants: Mr. Chuan-Fa Tang (湯泉發) r97221038@ntu.edu.tw

Office hours: By appointment

Grades:  Midterm exam 50%.  Final exam 50%

Readings: (1) Course slides.  (2) Reading materials mentioned in each lecture.

Week

Date

Topics

Lecturers

Slides

Online

Others

1

2011/02/24

Descriptive statistics, Genomic Data Analysis

Chen-Hsiang Yeang

2

2011/03/03

Probability

Hsin-Chou Yang

3

2011/03/10

Discrete Distributions and Contingency Tables

Hsin-Chou Yang

4

2011/03/17

Continuous Distributions, Expectations and Basic Statistics

Hsin-Chou Yang


 

5

2011/03/24

Parameter Estimation and Confidence Interval

Hsin-Sheng Yuan

 


 

6

2011/03/31

Hypothesis Testing, P-value, False Discovery Rate

Hsin-Sheng Yuan

 


 

7

2011/04/07

Comparative Study, Two Sample Test

Hsin-Sheng Yuan


 

8

2011/04/14

Review week

 

9

2011/04/21

Midterm Exam

 

10

2011/05/05

Correlation and Graphic Model I

Wei-Chung Liu

11

2011/05/19

Graphic Model II

Wei-Chung Liu

12

2011/05/31(Tue.)2-5pm

Regression Analysis and ANOVA

Hsuan-Yu Chen

 

13

2011/06/07(Tue.)2-5pm

Analysis of Categorical Data, Chisq and Multinomial

Hsuan-Yu Chen

14

2011/05/26

Clustering

Chen-Hsiang Yeang

15

2011/06/02

Classification

Chen-Hsiang Yeang

16

2011/06/09

Survival Data Analysis

Hsuan-Yu Chen

 

 

17

2011/06/16

Review week

 

18

2011/06/23

Final Exam

 

 

 

Bioinformatics Program, TIGP, Academia Sinica, Taiwan © 2004-2011