| Faculty |
| Core Faculty |
| Institute of Information Science
中央研究院資訊科學研究所 |
|
 |
|
Dr. Tsai ,
Huai-Kuang 蔡懷寬
hktsai@iis.sinica.edu.tw |
Students: Liu, Wan-Hsin;
Chen-Kai Shiau
 |
● Evolutionary algorithm
● Bioinformatics
● Regulatory mechanism
● Metagenomics
|
| |
|
 |
|
Dr. Sung , Ting-Yi 宋定懿
tsung@iis.sinica.edu.tw |
| Students: Thejkiran Pitti
|
● Graph algorithms
● Interconnection networks for parallel and distributed
systems
● Bioinformatics with focus on proteomics studies
● Mathematical programming
|
| |
 |
| Dr. Hsu, Wen-Lian
許聞廉
hsu@iis.sinica.edu.tw |
| Students: Cheng-Wei
Cheng; Neha Warikoo; Onkar Singh |
●
Analysis of algorithms, graph theory.
● Search methods
in artificial intelligence.
● Bioinformatics,
computational biology.
● Computational
linguistics.
● Natural
language understanding.
● Intelligent
agent systems
|
| |
| |
| Institue of Biomedical Science
中央研究院 生物醫學科學研究所 |
| |
|
 |
| Dr. Hwang, Ming-Jing 黃明經
mjhwang@ibms.sinica.edu.tw |
| Students:
|
● Bioinformatics
● Computational biology
● Systems biology |
| |
|
 |
| Dr. Jou, Yuh-Shan 周玉山
jou@ibms.sinica.edu.tw |
| Students: Ho,
Chun-Ming |
●
Cancer genomics
●
Molecular cancer biology
●
Bioinformatics |
| |
| Institute of Statistical Science
中央研究院 統計科學研究所 |
| |
|
 |
|
Dr. Li, Ker-Chau李克昭
kcli@stat.sinica.edu.tw |
| Students: Ku, Shih-Yen;
Lin, Chia-Hung
|
●
Bioinformatics
●
Systems biology
●
Lung cancer studies
●
High dimensional data analysis
●
Large ensembles of time series
●
Medical image analysis |
●
Machine learning
●
Statistical graphics
●
Bayesian computation
●
Regression
●
Censoring
●
Experimental design
●
Survey sampling |
| |
|
 |
| Dr. Shieh Shwu-Rong Grace 謝叔蓉
gshieh@stat.sinica.edu.tw |
| Students:
|
●
Analysis of next generation sequencing data (e.g.
ChIP-seq) and genomics data
●
Using genetic interactions to develop cancer
therapeutics
●
Constructing gene networks/predicting pathway
components |
| |
| |
|
 |
| Dr. Yang, Hsin-Chou 楊欣洲
hsinchou@stat.sinica.edu.tw |
| Students:
|
●
Statistical genetics/genomics
●
Disease gene mapping
●
Population genomics
●
Omics data analysis |
| |
|
 |
| Dr. Yuan, Shin-Sheng 袁新盛
syuan@stat.sinica.edu.tw |
| Students:
Chen, Hsiu-man |
● Microarray data
analysis
● Drug response mechanism
● Medical imaging data
analysis
● Manipulating mass spectra
database |
| |
| |
| Dr. Liu, Wei-chung 劉維中
wliu1975@stat.sinica.edu.tw |
| Students:
|
●
Mathematical biology
●
Theoretical ecology
●
Quantitative epidemiology
●
Network biology
●
Sociology
●
Systems biology |
| |
|
 |
| Dr. Yeang, Chen-Hsiang 楊振翔
chyeang@stat.sinica.edu.tw |
|
Students:
|
●
Cancer genomics
●
Molecular evolution |
| |
|
 |
| Dr. Chen, Hsuan-Yu 陳璿宇
hychen@stat.sinica.edu.tw |
| Students:
Lovely Raghav |
●
Bioinformatics
●
Epidemiology and biostatistic
●
Integrative cancer biology
●
Personalized medicine
|
| |
|
 |
|
Huang, Yen-Tsung
黃彥棕
ythuang@stat.sinica.edu.tw |
| Students: |
●
Biostatistics
●
Statistical Genetics
●
Integrative Genomics
●
Causal Mediation model
●
Survival Analysis
●
Epidemiology
●
Causal Inference
|
| |
| |
| Research Center for Applied Sciences
中央研究院 應用科學研究中心 |
|
 |
| Dr. Lin, Jung-Hsin 林榮信 jlin@ntu.edu.tw |
| Students:
|
●
Pharmacoinformatics
●
Computational biophysics
●
Bioinformatics
●
Structural biology
●
Molecular simulations |
| |
| |
| Biodiversity Research Center 中央研究院
生物多樣性研究中心 |
| |
|
 |
| Dr. Li, Wen-Hsiung 李文雄
whli@sinica.edu.tw |
| Students: Jerome
Panibe |
●
Evolutionary genomics
●
Molecular evolution
●
Bioinformatics and computational biology
●
Population genetics, human genetics |
| |
|
 |
| Dr. Sen-Lin Tang 湯森林
sltang@gate.sinica.edu.tw |
| Students:
Kshitij Tandon
|
●
Microbial Ecology and diversity
●
Microbial genomics (Metagenomics0
●
Computational biology |
| |
|
 |
| Dr. John Wang 王忠信
johnwang@gate.sinica.edu.tw |
| Students:
|
●
Genetics, genomics, behavior, and evolution of
social insects.
●
Evolution of genome size in nematodes.
|
| |
|
 |
| Dr. Dar Yi Wang 王達益
dywang@gate.sinica.edu.tw |
| Students:
|
| ●
Metagenomics. Evolutionary genomics.
|
| |
|
 |
|
Dr. Isheng Jason Tsai 蔡怡陞
ijtsai@gate.sinica.edu.tw |
| Students:
|
●
Evolution of parasitism and pathogenicity.
●
Eukaryotic microbe (fungi and helminths) ecology
and biodiversity.
|
| |
| |
| Genomics Research Center 中央研究院
基因體研究中心 |
| |
|
 |
| Dr. Yang, An-Suei 楊安綏
yangas@gate.sinica.edu.tw |
| Students: |
| The research direction in this laboratory is to
engineer proteins of significant biomedical importance.
We develop computational and bioinformatic approaches to
design stable protein scaffolds and use phage-based
molecular evolution to engineer stability in folding and
affinity toward target molecules. The goal is to enhance
the insight into molecular basis on protein recognition
and to use the engineered proteins in biomedical
applications. Specific areas of interest
include:computational protein design, recombinant
antibody engineering,protein-protein interaction,
computational structural biology, structural
bioinformatics, phage display of antibody libraries,
synthetic antibody fragment library construction. |
| |
|
 |
| Dr. Trees-Juen Chuang 莊樹諄
trees@gate.sinica.edu.tw |
| Students:
|
●
Bioinformatics and Computational Biology
●
Comparative & evolutionary genomics post-transcriptional
modification
●
Systems biology
●
Primate evolution
●Genome annotation |
| |
| Institute of Plant and Microbial
Biology 中央研究院 植物暨微生物學研究所 |
| |
|
 |
| Dr. Hsing, Yue-Ie 邢禹依
bohsing@gate.sinica.edu.tw |
| Students: |
●
Construction a Tagged Rice Population, TRIM, for
functional genomics analysis
●
Utilization/studies of the TRIM mutant resources
●
Analysis of advanced rice anther transcriptomes
●
Positional cloning and characterization of
important rice mutants
●
Re-annotation of genes encoding LEA proteins in the
rice and soybean genomes
●
Characterization of LEA proteins
Collection and characterization of wild rice and soybean
in Taiwan
Sequencing of Oryza nivara, an annual wild rice |
| |
|
 |
| Dr. Chen, Pao-Yang 陳柏仰
paoyang@gate.sinica.edu.tw |
| Students:
|
●
Next generation genetics
●
DNA methylation in plants
●
DNA methylation landscape in plants, animals, and human |
| |
| Institute of Chemistry 中央研究院
化學研究所 |
| |
|
 |
| Dr. Hsu, Chao-Ping 許昭萍
cherri@chem.sinica.edu.tw |
| Students: Ignasius Joanito |
●
Charge transport and energy transfer in advanced
materials
●
Dynamic description of biological systems |
| |
| Agricultural Biotechnology
Research Center 中央研究院 農業生物科技研究中心 |
|
 |
| Dr. Chen, Ho-Ming 陳荷明
homing@gate.sinica.edu.tw |
| Students:
Chun-Yi Chen |
●
Small RNA function
●
Genome of non-model
organism
|
| Institute of Molecular
Biology 中央研究院 分子生物研究所 |
| |
|
 |
| Dr. Lue, Jun-Yi 呂俊毅
jleu@imb.sinica.edu.tw |
| Students: |
●
Genetic incompatibility and speciation
●
Experimental evolution and genomic analysis of
genetic buffering |
| |
|
 |
|
Dr. Lin, Chien-Ling
林倩伶
mbcllin@gate.sinica.edu.tw |
| Students:
|
●
High-throughput
experimental and computational analysis of pre-mRNA
splicing regulation
●
Post-transcriptional mis-regulation
in diseases
●
Molecular and biochemical
analysis of pre-mRNA splicing and translational control |
| |
|
 |
|
Dr.
Chen, Sheng-Hong
陳昇宏
shengchen@gate.sinica.edu.tw |
| Students:
|
●
Single-cell systems
biology
●
Signaling dynamics
●
Cancer genomics
●
Drug combination design
|
| |
| |
Institute of Bioinformatics and
Structural Biology, National al Tsing Hua University
國立清華大學 生物資訊與結構生物研究所 |
| |
|
 |
| Dr. Yang, Lee-Wei 楊立威
lwyang@life.nthu.edu.tw |
| Students: Chan, Wai Soon;
Emmanuel Salawu |
| Protein Dynamics, Polymer Physics, Molecular
mechanics, Coarse-Grained model development, Enzymology,
Active site prediction, Physical model-based
prediction/analysis of NMR relaxation data and
temperature factors of X-ray determined structures,
Structure Refinement, DNA Polymerase, Homology modeling,
Biological and dynamics database/online calculation
tools development, Statistical analysis of biomolecular
traits in dynamics, Computational techniques for large
matrix decomposition, Linear response theory, Normal
Mode Analysis, Langevin Dynamics, Theoretical
reconciliation of lock-and-key and induce-fit paths on
substrate binding. |
| |
Institute of Bioinformatics and
Systems Biology, National Chiao Tung University
國立交通大學 生物資訊及系統生物研究所 |
| |
|
 |
| Dr. Henry Lu, Horng-Shing 盧鴻興
hslu@stat.nctu.edu.tw |
| Students: Liu, Pei-Ling;
Maria Simak |
●
Scientific computing
●
Image science
●
Bioinformatics |
| |
|
 |
| Dr. Yang, Jinn-Moon 楊進木
moon@faculty.nctu.edu.tw |
| Students: Nikhil
Pathak
|
●
Bioinformatics systems biology
●
Drug design
●
Systems biology
|
| |
|
 |
| Dr. Chu, Jhih-Wei 朱智瑋
jwchu@nctu.edu.tw |
| Students: |
●
Biosystems simulation
●
Multiscale modeling theory
●
Protein conformational changes and alloetery
●
Drug discovery and development
●
Molecular kinetics |
| |
Institute of BioMedical
Informatics, National Yang-Ming University
國立陽明大學 生物醫學資訊研究所 |
| |
|
 |
| Dr. Yang, Ueng-Cheng 楊永正
yang@ym.edu.tw |
| Students: Boris
Stitnicky
|
●
Analysis of Pathway
●
Bioinformatic analysis on disease candidate genes
and mechanisms |
| |
|
 |
| Dr. Chang, Chuan-Hsiung 張傳雄
cchang@ym.edu.tw |
| Students: Wu, Jesse
|
● Comparative
genomics
● Genome design and engineering
● Synthetic biology |
| |
|
 |
| Dr. Huang, Hsuan-Cheng 黃宣誠
hsuancheng@ym.edu.tw |
| Students:
Chi-Chun Chen; |
●
Networks biology
●
Systems biology
●
Bioinformatics |
|
|
|
 |
| Dr. Wu, Kun-Pin 巫坤品
kpwu@ym.edu.tw |
| Students: |
●
Algorithms
●
Computational proteomics |
| |
|
 |
|
Dr. Huang, Jie-Rong 黃介嶸
jierongh@ym.edu.tw |
| Students:
|
●
Structural
biology
●
Intrinsically disordered proteins
●
Molecular dynamics simulation
●
NMR spectroscopy |
| |
|
 |
|
Dr.
Lin, Chen-Ching 林振慶
ChaosLin@ym.edu.tw |
| Students:
|
●
Network Biology
●
Computational Biology
●
Bioinformatics |
| |
|
 |
|
Dr.
Huang, Yen-Hua
黃彥華
yhhuang@ym.edu.tw |
| Students:
|
●
NGS data analysis and integrated interpretation
(e.g. integration with heterogeneous data sources)
●
Annotation of new genomes and comparative
genomics based data mining
●
Human gene expression profile
analysis and regulatory circuit reconstruction |
| |
Graduate Institute of Biomedical
Electronics and Bioinformatics, National Taiwan
University
國立台灣大學 生醫電子與資訊學研究所 |
| |
|
 |
|
Dr.
Huang, Nien-Tsu
黃念祖
nthuang@ntu.edu.tw |
| Students:
|
|
●
developing integrated electrical, optical and
mechanical miniaturized fluidics and sensors for
biological applications, such as cellular biology, drug
screening, and disease diagnosis |
|
|
|
 |
|
Dr.
Lai, Liang-Chuan
賴亮全
llai@ntu.edu.tw |
| Students:
|
●
using
microarray or next generation sequencing to explore the
cancer genomics
●
Investigation of regulatory mechanism of NDRG1 upon
reoxygenation
●
Regulation of transcription and metastasis of semaphorin
family in lung cancer |
| |
|
 |
|
Dr.
Lu, Tzu-Pin
盧子彬
tplu@ntu.edu.tw |
| Students:
|
●
Bioinformatics
●
Microarray and next
generation sequencing data analysis
●
Computational Biology |
| |
|
 |
|
Dr.
Tseng, Y. Jane
曾宇鳳
yjtseng@csie.ntu.edu.tw |
| Students:
|
●
Computational Chemistry and Toxicology
●
Metabolomics
●
Bioinformatics
●
Cheminformatics
●
Health informatics |
| |
|
 |
|
Dr.
Chen, Chien-Yu
陳倩瑜
chienyuchen@ntu.edu.tw |
| Students:
|
●
Bioinformatics
●
Data Mining
●
Machine Learning |
| |
|
 |
|
Dr.
Chuang, Eric Y.
莊曜宇
chuangey@ntu.edu.tw |
| Students: Nam
Nhut Phan |
●
Biochip Bioinformatics
●
Next-Generation Sequencing
●
Radiation Biology
●
Cancer Biology
●
Bioinformatics
|
| |
|
 |
|
Dr.
Lee, Hsin-Yu
李心予
hsinyu@ntu.edu.tw |
| Students:
|
●
Cellular Biology
●
Molecular Biology
●
Endocrinology |
| |
|
 |
|
Dr.
Sun, Wei-Zen
孫維仁 wzsun@ntu.edu.tw |
| Students:
|
●
Pain medicine
●
acupuncture and
moxibustion
●
anesthesiology |
| |
|
 |
|
Dr.
Tsai, Mon-Hsun
蔡孟勳
motiont@gmail.com |
| Students:
|
●
Bioinformatics
●
Cell Biology
●
Microarray
●
Radiation Biology |
|
|
|
 |
|
Dr.
Huang, Hsiao-Chun
黃筱鈞
hsiaochun@ntu.edu.tw |
| Students:
|
●
Molecular Cell Biology
●
Systems and Synthetic
Biology
●
Cell Division
|
| |
|
 |
|
Dr.
Chen, Chung-Ping 陳中平
cpchen@ntu.edu.tw |
| Students:
|
●
Statistical Timing
Analysis
●
Circuit Simulation and
Optimization
●
Microprocessor Design
|
| |
|
 |
|
Dr.
Kuo, Po-Lin
郭柏齡
polin@ntu.edu.tw |
| Students:
|
●
Biophysics
●
Mechanobiology
●
Biomechanics |
| |
|
 |
|
Dr.
Lin, En-Chung
林恩仲
edlin01@ntu.edu.tw |
| Students:
|
●
Functional Genomics and
Proteomics
●
Bioinfomatics
●
Statistical Biology ●
Management and
Reproduction of Transgenic Animal Science
|
| |
|
 |
|
Dr. Juan, Hsueh-Fen
阮雪芬
yukijuan@ntu.edu.tw |
| Students:
|
● Genomics
●
Bioinfomatics
●
Proteomics |
| |
| |
| |
| |
|
：Eligible to Take Student |
|
