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Faculty     :Eligible to Take Student
Core Faculty - Advisory Committee
 
Institute of Biological Chemistry 中央研究院 生物化學研究所

Dr. James C. Liao 廖俊智院長
liaoj@gate.sinica.edu.tw
Students: David Nicola Streuli
Professor Liao is a world leader in metabolic and synthetic biology, particularly in the area of microbial synthesis of fuels and chemicals, and in the redesign of primary metabolic network. He also developed Network Component Analysis (NCA) and Ensemble Modeling for analyzing transcription regulatory networks, and designed synthetic (artificial) gene-metabolic regulatory circuits, which set the foundation for metabolic synthetic biology.
 
Biodiversity Research Center 中央研究院 生物多樣性研究中心

Dr. Wen-Hsiung Li 李文雄
whli@sinica.edu.tw
Students: Jerome Panibe
● Evolutionary genomics
● Molecular evolution
● Bioinformatics and computational biology
● Population genetics, human genetics
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Ker-Chau Li 李克昭
kcli@stat.sinica.edu.tw
Students:
● Bioinformatics
● Systems biology
● Lung cancer studies
● High dimensional data analysis
● Large ensembles of time series
● Medical image analysis
● Machine learning
● Statistical graphics
● Bayesian computation
● Regression
● Censoring
● Experimental design
● Survey sampling
 
Core Faculty – Division of Mathematics and Physical Sciences, Academia Sinica 中央研究院數理科學組
 
Institute of Information Science 中央研究院資訊科學研究所

Dr. Huai-Kuang Tsai 蔡懷寬
hktsai@iis.sinica.edu.tw
Students: Wan-Hsin Liu, Yu-Hsin Chen
● Evolutionary algorithm
● Bioinformatics
● Regulatory mechanism
● Metagenomics
 
Institute of Information Science 中央研究院資訊科學研究所

Dr. Ting-Yi Sung 宋定懿
tsung@iis.sinica.edu.tw
Students: Onkar Singh
● Graph algorithms
● Interconnection networks for parallel and distributed systems
● Bioinformatics with focus on proteomics studies
● Mathematical programming
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Grace S. Shieh 謝叔蓉
gshieh@stat.sinica.edu.tw
Students: Jesse Wu
● Analysis of next generation sequencing data (e.g. ChIP-seq) and genomics data
● Using genetic interactions to develop cancer therapeutics
● Constructing gene networks/predicting pathway components
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Hsin-Chou Yang 楊欣洲
hsinchou@stat.sinica.edu.tw
Students:
● Statistical genetics/genomics
● Disease gene mapping
● Population genomics
● Omics data analysis
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Shin-Sheng Yuan 袁新盛
syuan@stat.sinica.edu.tw
Students: Hsiu-man Chen
● Microarray data analysis
● Drug response mechanism
● Medical imaging data analysis
● Manipulating mass spectra database
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Wei-chung Liu 劉維中
wliu1975@stat.sinica.edu.tw
Students:
● Mathematical biology
● Theoretical ecology
● Quantitative epidemiology
● Network biology
● Sociology
● Systems biology
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Chen-Hsiang Yeang 楊振翔
chyeang@stat.sinica.edu.tw
Students:
● Cancer genomics
● Molecular evolution
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Hsuan-Yu Chen 陳璿宇
hychen@stat.sinica.edu.tw
Students:
● Bioinformatics
● Epidemiology and biostatistic
● Integrative cancer biology
● Personalized medicine
 
Institute of Statistical Science 中央研究院 統計科學研究所

Dr. Yen-Tsung Huang 黃彥棕
ythuang@stat.sinica.edu.tw
Students: Jia-Ying Su
● Biostatistics
● Statistical Genetics
● Integrative Genomics
● Causal Mediation model
● Survival Analysis
● Epidemiology
● Causal Inference
 
Research Center for Applied Sciences?中央研究院 應用科學研究中心

Dr. Jung-Hsin Lin 林榮信
jlin@ntu.edu.tw
Students:
● Pharmacoinformatics
● Computational biophysics
● Bioinformatics
● Structural biology
● Molecular simulations
 
Institute of Chemistry 中央研究院 化學研究所

Dr. Chao-Ping Hsu 許昭萍
cherri@chem.sinica.edu.tw
Students: Erickson Erigio Fajiculay
● Charge transport and energy transfer in advanced materials
● Dynamic description of biological systems
 
Research Center for Information Technology Innovation中央研究院 資訊科技創新研究中心

Dr. Yu Tsao 曹昱
yu.tsao@citi.sinica.edu.tw
Students:
● Assisitve Speech Communication Technologies
● Audio-coding
● Deep Neural Networks
● Biomedical Signal Processing
● Speech Signal Processing
 
Core Faculty – Division of Life Sciences, Academia Sinica 中央研究院生命科學組
 
Institute of Biomedical Science生物醫學科學研究所

Dr. Ming-Jing Hwang 黃明經
mjhwang@ibms.sinica.edu.tw
Students:
● Bioinformatics
● Computational biology
● Systems biology
 
Institute of Biomedical Science生物醫學科學研究所

Dr. Yuh-Shan Jou 周玉山
jou@ibms.sinica.edu.tw
Students: Chun-Ming Ho
● Cancer genomics
● Molecular cancer biology
● Bioinformatics
 
Biodiversity Research Center 中央研究院 生物多樣性研究中心

Dr. Sen-Lin Tang 湯森林
sltang@gate.sinica.edu.tw
Students:
● Microbial Ecology and diversity
● Microbial genomics (Metagenomics0
● Computational biology
 
Biodiversity Research Center 中央研究院 生物多樣性研究中心

Dr. John Wang 王忠信
johnwang@gate.sinica.edu.tw
Students:
● Genetics, genomics, behavior, and evolution of social insects.
● Evolution of genome size in nematodes.
 
Biodiversity Research Center 中央研究院 生物多樣性研究中心

Dr. Isheng Jason Tsai 蔡怡陞
ijtsai@gate.sinica.edu.tw
Students: Hsin-Han Lee
● Comparative and population genomics
● Evolution of parasitism and pathogenicity
● Eukaryotic microbe (fungi and helminths) ecology and biodiversity
 
Genomics Research Center 中央研究院 基因體研究中心

Dr. An-Suei Yang 楊安綏
yangas@gate.sinica.edu.tw
Students:
The research direction in this laboratory is to engineer proteins of significant biomedical importance. We develop computational and bioinformatic approaches to design stable protein scaffolds and use phage-based molecular evolution to engineer stability in folding and affinity toward target molecules. The goal is to enhance the insight into molecular basis on protein recognition and to use the engineered proteins in biomedical applications. Specific areas of interest include:computational protein design, recombinant antibody engineering,protein-protein interaction, computational structural biology, structural bioinformatics, phage display of antibody libraries, synthetic antibody fragment library construction.
 
Genomics Research Center 中央研究院 基因體研究中心

Dr. Trees-Juen Chuang 莊樹諄
trees@gate.sinica.edu.tw
Students:
● Bioinformatics and Computational Biology
● Comparative & evolutionary genomics post-transcriptional modification
● Systems biology
● Primate evolution
● Genome annotation
 
Institute of Plant and Microbial Biology 中央研究院 植物暨微生物學研究所

Dr. Yue-Ie Hsing 邢禹依
bohsing@gate.sinica.edu.tw
Students:
● Construction a Tagged Rice Population, TRIM, for functional genomics analysis
● Utilization/studies of the TRIM mutant resources
● Analysis of advanced rice anther transcriptomes
● Positional cloning and characterization of important rice mutants
● Re-annotation of genes encoding LEA proteins in the rice and soybean genomes
● Characterization of LEA proteins Collection and characterization of wild rice and soybean in Taiwan Sequencing of Oryza nivara, an annual wild rice
 
Institute of Plant and Microbial Biology 中央研究院 植物暨微生物學研究所

Dr. Pao-Yang Chen 陳柏仰
paoyang@gate.sinica.edu.tw
Students: Yu-Chun Huang
● Next generation genetics
● DNA methylation in plants
● DNA methylation landscape in plants, animals, and human
 
Institute of Plant and Microbial Biology 中央研究院 植物暨微生物學研究所

Dr. Chuan Ku 顧銓
chuanku@gate.sinica.edu.tw
Students:
● Genome evolution and regulation
● Algae and giant viruses
● Ancient evolution
● Microbial interactions and ecology
● Single-cell omics
 
Agricultural Biotechnology Research Center 中央研究院農業生物科技研究中心

Dr. Ho-Ming Chen 陳荷明
homing@gate.sinica.edu.tw
Students: Chun-Yi Chen
● Small RNA function
● Genome of non-model organism
 
Institute of? Molecular Biology 中央研究院 分子生物研究所

Dr. Jun-Yi Lue 呂俊毅
jleu@imb.sinica.edu.tw
Students:
● Genetic incompatibility and speciation
● Experimental evolution and genomic analysis of genetic buffering
 
Institute of Molecular Biology 中央研究院 分子生物研究所

Dr. Chien-Ling Lin 林倩伶
mbcllin@gate.sinica.edu.tw
Students:
● High-throughput experimental and computational analysis of pre-mRNA splicing regulation
● Post-transcriptional mis-regulation in diseases
● Molecular and biochemical analysis of pre-mRNA splicing and translational control
 
Institute of Molecular Biology 中央研究院 分子生物研究所

Dr. Sheng-Hong Chen 陳昇宏
shengchen@gate.sinica.edu.tw
Students:
● Single-cell systems biology
● Signaling dynamics
● Cancer genomics
● Drug combination design
 
Core Faculty in Collaborative Universities
 
Institute of Bioinformatics and Structural Biology, National Tsing Hua University
國立清華大學 生物資訊與結構生物研究所

Dr. Lee-Wei Yang 楊立威
lwyang@life.nthu.edu.tw
Students: Wai Soon Chan
Protein Dynamics, Polymer Physics, Molecular mechanics, Coarse-Grained model development, Enzymology, Active site prediction, Physical model-based prediction/analysis of NMR relaxation data and temperature factors of X-ray determined structures, Structure Refinement, DNA Polymerase, Homology modeling, Biological and dynamics database/online calculation tools development, Statistical analysis of biomolecular traits in dynamics, Computational techniques for large matrix decomposition, Linear response theory, Normal Mode Analysis, Langevin Dynamics, Theoretical reconciliation of lock-and-key and induce-fit paths on substrate binding.
 
Institute of Bioinformatics and Structural Biology, National Tsing Hua University
國立清華大學 生物資訊與結構生物研究所

Dr. Hsiao-Han Chang 張筱涵
hhchang@life.nthu.edu.tw
Students:
Professor Chang investigates how pathogens evolve, emerge, and spread through populations. I tackle these questions by identifying genetic signatures of migration and natural selection in pathogen genomes using approaches from genomics, bioinformatics, statistics, and mathematical modeling.
 
Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University
國立陽明交通大學 生物資訊及系統生物研究所

Dr. Horng-Shing Henry Lu 盧鴻興
hslu@stat.nctu.edu.tw
Students:
● Scientific computing
● Image science
● Bioinformatics
 
Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University
國立陽明交通大學 生物資訊及系統生物研究所

Dr. Jinn-Moon Yang 楊進木
moon@faculty.nctu.edu.tw
Students:
● Bioinformatics systems biology
● Drug design
● Systems biology
 
Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University
國立陽明交通大學 生物資訊及系統生物研究所

Dr. Jhih-Wei Chu 朱智瑋
jwchu@nctu.edu.tw
Students:
● Biosystems simulation
● Multiscale modeling theory
● Protein conformational changes and alloetery
● Drug discovery and development
● Molecular kinetics
 
Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University
國立陽明交通大學 生物資訊及系統生物研究所

Dr. Tai-Ming Ko 柯泰名
taiming23@gmail.com
Students: Po-Yuan Chen
● Single cell sequencing
● Nano-pore sequencing
● Immunogenomics
● Pharmacogenomics
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Ueng-Cheng Yang 楊永正
yang@ym.edu.tw
Students: Ming-Siang Huang
● Analysis of Pathway
● Bioinformatic analysis on disease candidate genes and mechanisms
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Chuan-Hsiung Chang 張傳雄
cchang@ym.edu.tw
Students:
● Comparative genomics
● Genome design and engineering
● Synthetic biology
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Hsuan-Cheng Huang 黃宣誠
hsuancheng@ym.edu.tw
Students: Chi-Chun Chen; Yueh-Hua Tu
● Networks biology
● Systems biology
● Bioinformatics
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Kun-Pin Wu 巫坤品
kpwu@ym.edu.tw
Students:
● Algorithms
● Computational proteomics
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Jie-Rong Huang 黃介嶸
jierongh@ym.edu.tw
Students:
● Structural biology
● Intrinsically disordered proteins
● Molecular dynamics simulation
● NMR spectroscopy
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Chen-Ching Lin 林振慶
chaosLin@ym.edu.tw
Students:
● Network Biology
● Computational Biology
● Bioinformatics
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Yen-Hua Huang 黃彥華
yhhuang@ym.edu.tw
Students:
● NGS data analysis and integrated interpretation (e.g. integration with heterogeneous data sources)
● Annotation of new genomes and comparative genomics based data mining
● Human gene expression profile analysis and regulatory circuit reconstruction
 
Institute of BioMedical Informatics, National Yang Ming Chiao Tung University
國立陽明交通大學 生物醫學資訊研究所

Dr. Chun-Ying Wu 吳俊穎
dr.wu.taiwan@gmail.com
Students:
● Microbiota and human diseases
● Health big data research
● Digestive cancer translational research
● Biomarkers and biochips
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Chung-Ping Chen 陳中平
cpchen@ntu.edu.tw
Students:
● Statistical Timing Analysis
● Circuit Simulation and Optimization
● Microprocessor Design
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Nien-Tsu Huang 黃念祖
nthuang@ntu.edu.tw
Students:
● developing integrated electrical, optical and mechanical miniaturized fluidics and sensors for biological applications, such as cellular biology, drug screening, and disease diagnosis
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Po-Lin Kuo 郭柏齡
poling@ntu.edu.tw
Students:
● Biophysics
● Mechanobiology
● Biomechanics
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Liang-Chuan Lai 賴亮全
llai@ntu.edu.tw
Students:
● using microarray or next generation sequencing to explore the cancer genomics
● Investigation of regulatory mechanism of NDRG1 upon reoxygenation
● Regulation of transcription and metastasis of semaphorin family in lung cancer
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Tzu-Pin Lu 盧子彬
tplu@ntu.edu.tw
Students: Yu-Ching Hsu
● Bioinformatics
● Microarray and next generation sequencing data analysis
● Computational Biology
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Tseng, Y. Jane 曾宇鳳
yjtseng@csie.ntu.edu.tw
Students:
● Computational Chemistry and Toxicology
● Metabolomics
● Bioinformatics
● Cheminformatics
● Health informatics
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Chien-Yu Chen 陳倩瑜
chienyuchen@ntu.edu.tw
Students:
● Bioinformatics
● Data Mining
● Machine Learning
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Eric Y. Chuang 莊曜宇
chuangey@ntu.edu.tw
Students: Nhut Nam Phan
● Biochip Bioinformatics
● Next-Generation Sequencing
● Radiation Biology
● Cancer Biology
● Bioinformatics
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Hsin-Yu Lee 李心予
hsinyu@ntu.edu.tw
Students:
● Cellular Biology
● Molecular Biology
● Endocrinology
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Wei-Zen Sun 孫維仁
wzsun@ntu.edu.tw
Students:
● Pain medicine
● acupuncture and moxibustion
● anesthesiology
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Mon-Hsun Tsai 蔡孟勳
motiont@gmail.com
Students:
● Bioinformatics
● Cell Biology
● Microarray
● Radiation Biology
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. En-Chung Lin 林恩仲
eclin01@ntu.edu.tw
Students:
● Functional Genomics and Proteomics
● Bioinfomatics
● Statistical Biology
● Management and Reproduction of Transgenic Animal Science
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Hsiao-Chun Huang 黃筱鈞
hsiaochun@ntu.edu.tw
Students:
● Molecular Cell Biology
● Systems and Synthetic Biology
● Cell Division
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Hsueh-Fen Juan 阮雪芬
yukijuan@ntu.edu.tw
Students:
● Genomics
● Bioinfomatics
● Proteomics
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. Ruey-Feng Chang 張瑞峰
rfchang@csie.ntu.edu.tw
Students:
● Medical Image Processing
● Medical Image Analysis
● Computer-aided Diagnosis
● Computer-aided Detection
● Deep Learning
● Medical Ain
 
Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
國立台灣大學 生醫電子與資訊學研究所

Dr. An-Chi Wei 魏安祺
acwei86@ntu.edu.tw
Students:
● System Biology
● Modeling and Simulation of biological systems
● Bioenergetics and Metabolism
● Mitochondria
 
   
TIGP Sinica IIS